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Commit 585fdb68 authored by Javier's avatar Javier
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Fits now include xerrors

parent 2763f0ab
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Showing with 498 additions and 115 deletions
Manifest.toml
View file @ 585fdb68
......@@ -10,15 +10,9 @@ version = "0.1.0"
[[AbstractFFTs]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "051c95d6836228d120f5f4b984dd5aba1624f716"
git-tree-sha1 = "8ed9de2f1b1a9b1dee48582ad477c6e67b83eb2c"
uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c"
version = "0.5.0"
[[Adapt]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "95f8bda0555209f122bc796b0382ea4a3a121720"
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
version = "2.1.0"
version = "1.0.0"
[[ArgCheck]]
git-tree-sha1 = "dedbbb2ddb876f899585c4ec4433265e3017215a"
......@@ -27,9 +21,9 @@ version = "2.1.0"
[[ArrayInterface]]
deps = ["LinearAlgebra", "Requires", "SparseArrays"]
git-tree-sha1 = "22a41da12a13baf9bd22f16fb866086c33ad7835"
git-tree-sha1 = "91f95e873f0e53d8f5e6603516fa8ec3dc312859"
uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
version = "2.13.5"
version = "2.14.14"
[[Artifacts]]
deps = ["Pkg"]
......@@ -54,11 +48,17 @@ git-tree-sha1 = "c3598e525718abcc440f69cc6d5f60dda0a1b61e"
uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
version = "1.0.6+5"
[[Cairo_jll]]
deps = ["Artifacts", "Bzip2_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
git-tree-sha1 = "e2f47f6d8337369411569fd45ae5753ca10394c6"
uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a"
version = "1.16.0+6"
[[ColorSchemes]]
deps = ["ColorTypes", "Colors", "FixedPointNumbers", "Random", "StaticArrays"]
git-tree-sha1 = "950f477dfe152a0dd2221124986a5722db385199"
git-tree-sha1 = "3141757b5832ee7a0386db87997ee5a23ff20f4d"
uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
version = "3.10.0"
version = "3.10.2"
[[ColorTypes]]
deps = ["FixedPointNumbers", "Random"]
......@@ -68,9 +68,9 @@ version = "0.10.9"
[[Colors]]
deps = ["ColorTypes", "FixedPointNumbers", "InteractiveUtils", "Reexport"]
git-tree-sha1 = "008d6bc68dea6beb6303fdc37188cb557391ebf2"
git-tree-sha1 = "ac5f2213e56ed8a34a3dd2f681f4df1166b34929"
uuid = "5ae59095-9a9b-59fe-a467-6f913c188581"
version = "0.12.4"
version = "0.12.6"
[[CommonSubexpressions]]
deps = ["MacroTools", "Test"]
......@@ -80,27 +80,27 @@ version = "0.3.0"
[[Compat]]
deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
git-tree-sha1 = "7c7f4cda0d58ec999189d70f5ee500348c4b4df1"
git-tree-sha1 = "919c7f3151e79ff196add81d7f4e45d91bbf420b"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "3.16.0"
version = "3.25.0"
[[CompilerSupportLibraries_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "7c4f882c41faa72118841185afc58a2eb00ef612"
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "8e695f735fca77e9708e795eda62afdb869cbb70"
uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
version = "0.3.3+0"
version = "0.3.4+0"
[[Conda]]
deps = ["JSON", "VersionParsing"]
git-tree-sha1 = "7a58bb32ce5d85f8bf7559aa7c2842f9aecf52fc"
git-tree-sha1 = "c0647249d785f1d5139c0cc96db8f6b32f7ec416"
uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d"
version = "1.4.1"
version = "1.5.0"
[[Contour]]
deps = ["StaticArrays"]
git-tree-sha1 = "d05a3a25b762720d40246d5bedf518c9c2614ef5"
git-tree-sha1 = "9f02045d934dc030edad45944ea80dbd1f0ebea7"
uuid = "d38c429a-6771-53c6-b99e-75d170b6e991"
version = "0.5.5"
version = "0.5.7"
[[Crayons]]
git-tree-sha1 = "3f71217b538d7aaee0b69ab47d9b7724ca8afa0d"
......@@ -108,15 +108,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
version = "4.0.4"
[[DataAPI]]
git-tree-sha1 = "176e23402d80e7743fc26c19c681bfb11246af32"
git-tree-sha1 = "ad84f52c0b8f05aa20839484dbaf01690b41ff84"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.3.0"
version = "1.4.0"
[[DataStructures]]
deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
git-tree-sha1 = "0347f23484a96d56e7096eb1f55c6975be34b11a"
git-tree-sha1 = "4437b64df1e0adccc3e5d1adbc3ac741095e4677"
uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
version = "0.18.6"
version = "0.18.9"
[[DataValueInterfaces]]
git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
......@@ -139,15 +139,15 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
[[DiffResults]]
deps = ["StaticArrays"]
git-tree-sha1 = "da24935df8e0c6cf28de340b958f6aac88eaa0cc"
git-tree-sha1 = "c18e98cba888c6c25d1c3b048e4b3380ca956805"
uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5"
version = "1.0.2"
version = "1.0.3"
[[DiffRules]]
deps = ["NaNMath", "Random", "SpecialFunctions"]
git-tree-sha1 = "eb0c34204c8410888844ada5359ac8b96292cfd1"
git-tree-sha1 = "214c3fcac57755cfda163d91c58893a8723f93e9"
uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
version = "1.0.1"
version = "1.0.2"
[[Distributed]]
deps = ["Random", "Serialization", "Sockets"]
......@@ -166,16 +166,22 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
version = "0.8.3"
[[Documenter]]
deps = ["Base64", "Dates", "DocStringExtensions", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"]
git-tree-sha1 = "fb1ff838470573adc15c71ba79f8d31328f035da"
deps = ["Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"]
git-tree-sha1 = "b7715ae18be02110a8cf9cc8ed2ccdb1e3e3aba2"
uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
version = "0.25.2"
version = "0.26.1"
[[EarCut_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "eabac56550a7d7e0be499125673fbff560eb8b20"
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "92d8f9f208637e8d2d28c664051a00569c01493d"
uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5"
version = "2.1.5+0"
version = "2.1.5+1"
[[Expat_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "1402e52fcda25064f51c77a9655ce8680b76acf0"
uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
version = "2.2.7+6"
[[FFMPEG]]
deps = ["FFMPEG_jll", "x264_jll"]
......@@ -191,33 +197,33 @@ version = "4.3.1+4"
[[FFTW]]
deps = ["AbstractFFTs", "FFTW_jll", "IntelOpenMP_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Reexport"]
git-tree-sha1 = "8b7c16b56936047ca41bf25effa137ae0b381ae8"
git-tree-sha1 = "c31e446bf3b12aad2ec8fc500fe19528c148d811"
uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
version = "1.2.4"
version = "1.3.1"
[[FFTW_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "f10c3009373a2d5c4349b8a2932d8accb892892d"
git-tree-sha1 = "5a0d4b6a22a34d17d53543bd124f4b08ed78e8b0"
uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a"
version = "3.3.9+6"
version = "3.3.9+7"
[[FastGaussQuadrature]]
deps = ["LinearAlgebra", "SpecialFunctions"]
git-tree-sha1 = "3c73b2165822a0e1c4cc576d925c47d50be55c3d"
git-tree-sha1 = "6ea5f7b4aecce0e3a14ca1da03f62f86148c8fa3"
uuid = "442a2c76-b920-505d-bb47-c5924d526838"
version = "0.4.3"
version = "0.4.5"
[[FillArrays]]
deps = ["LinearAlgebra", "Random", "SparseArrays"]
git-tree-sha1 = "b955c227b0d1413a1a97e2ca0635a5de019d7337"
git-tree-sha1 = "502b3de6039d5b78c76118423858d981349f3823"
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
version = "0.9.6"
version = "0.9.7"
[[FiniteDiff]]
deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"]
git-tree-sha1 = "a78ee56e4636c20c2db9ccde8afe57065f6ab387"
git-tree-sha1 = "7f7216e0eb46c20ee8ddab5c8f9a262ed72587b6"
uuid = "6a86dc24-6348-571c-b903-95158fe2bd41"
version = "2.7.0"
version = "2.7.2"
[[FixedPointNumbers]]
deps = ["Statistics"]
......@@ -225,11 +231,23 @@ git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc"
uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93"
version = "0.8.4"
[[Fontconfig_jll]]
deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"]
git-tree-sha1 = "35895cf184ceaab11fd778b4590144034a167a2f"
uuid = "a3f928ae-7b40-5064-980b-68af3947d34b"
version = "2.13.1+14"
[[Formatting]]
deps = ["Printf"]
git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8"
uuid = "59287772-0a20-5a39-b81b-1366585eb4c0"
version = "0.4.2"
[[ForwardDiff]]
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "NaNMath", "Random", "SpecialFunctions", "StaticArrays"]
git-tree-sha1 = "1d090099fb82223abc48f7ce176d3f7696ede36d"
git-tree-sha1 = "c26b56e9b9f0687f7ca887f6b6ded03d269e0e35"
uuid = "f6369f11-7733-5829-9624-2563aa707210"
version = "0.10.12"
version = "0.10.15"
[[FreeType2_jll]]
deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
......@@ -243,6 +261,12 @@ git-tree-sha1 = "0d20aed5b14dd4c9a2453c1b601d08e1149679cc"
uuid = "559328eb-81f9-559d-9380-de523a88c83c"
version = "1.0.5+6"
[[GLFW_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"]
git-tree-sha1 = "a1bbf700b5388bffc3d882f4f4d625cf1c714fd7"
uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89"
version = "3.3.2+1"
[[GMP_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "15abc5f976569a1c9d651aff02f7222ef305eb2a"
......@@ -250,22 +274,39 @@ uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d"
version = "6.1.2+6"
[[GR]]
deps = ["Base64", "DelimitedFiles", "HTTP", "JSON", "LinearAlgebra", "Printf", "Random", "Serialization", "Sockets", "Test", "UUIDs"]
git-tree-sha1 = "cd0f34bd097d4d5eb6bbe01778cf8a7ed35f29d9"
deps = ["Base64", "DelimitedFiles", "GR_jll", "HTTP", "JSON", "LinearAlgebra", "Pkg", "Printf", "Random", "Serialization", "Sockets", "Test", "UUIDs"]
git-tree-sha1 = "b90b826782cb3ac5b7a7f41b3fd0113180257ed4"
uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
version = "0.52.0"
version = "0.53.0"
[[GR_jll]]
deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt_jll", "Zlib_jll", "libpng_jll"]
git-tree-sha1 = "8aee6fa096b0cbdb05e71750c978b96a08c78951"
uuid = "d2c73de3-f751-5644-a686-071e5b155ba9"
version = "0.53.0+0"
[[GeometryBasics]]
deps = ["EarCut_jll", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"]
git-tree-sha1 = "49d13ebd048bd71315ff98bdc2c560ec16eda2b4"
git-tree-sha1 = "a28d728c2d825285fe27f38ca322399d35d1a5b9"
uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
version = "0.3.1"
[[GeometryTypes]]
deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "StaticArrays"]
git-tree-sha1 = "34bfa994967e893ab2f17b864eec221b3521ba4d"
uuid = "4d00f742-c7ba-57c2-abde-4428a4b178cb"
version = "0.8.3"
version = "0.3.6"
[[Gettext_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"]
git-tree-sha1 = "8c14294a079216000a0bdca5ec5a447f073ddc9d"
uuid = "78b55507-aeef-58d4-861c-77aaff3498b1"
version = "0.20.1+7"
[[Glib_jll]]
deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE_jll", "Pkg", "Zlib_jll"]
git-tree-sha1 = "04690cc5008b38ecbdfede949220bc7d9ba26397"
uuid = "7746bdde-850d-59dc-9ae8-88ece973131d"
version = "2.59.0+4"
[[Grisu]]
git-tree-sha1 = "03d381f65183cb2d0af8b3425fde97263ce9a995"
uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe"
version = "1.0.0"
[[HTTP]]
deps = ["Base64", "Dates", "IniFile", "MbedTLS", "Sockets"]
......@@ -273,6 +314,12 @@ git-tree-sha1 = "c7ec02c4c6a039a98a15f955462cd7aea5df4508"
uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
version = "0.8.19"
[[IOCapture]]
deps = ["Logging"]
git-tree-sha1 = "377252859f740c217b936cebcd918a44f9b53b59"
uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89"
version = "0.1.1"
[[IniFile]]
deps = ["Test"]
git-tree-sha1 = "098e4d2c533924c921f9f9847274f2ad89e018b8"
......@@ -280,10 +327,10 @@ uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f"
version = "0.5.0"
[[IntelOpenMP_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "fb8e1c7a5594ba56f9011310790e03b5384998d6"
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "d979e54b71da82f3a65b62553da4fc3d18c9004c"
uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0"
version = "2018.0.3+0"
version = "2018.0.3+2"
[[InteractiveUtils]]
deps = ["Markdown"]
......@@ -300,9 +347,9 @@ uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0"
[[JLLWrappers]]
git-tree-sha1 = "dbc0967f6403829a6682493fdb4ec7c0ebfd2e68"
git-tree-sha1 = "a431f5f2ca3f4feef3bd7a5e94b8b8d4f2f647a0"
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
version = "1.1.1"
version = "1.2.0"
[[JSON]]
deps = ["Dates", "Mmap", "Parsers", "Unicode"]
......@@ -310,17 +357,35 @@ git-tree-sha1 = "81690084b6198a2e1da36fcfda16eeca9f9f24e4"
uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
version = "0.21.1"
[[JpegTurbo_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "9aff0587d9603ea0de2c6f6300d9f9492bbefbd3"
uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8"
version = "2.0.1+3"
[[LAME_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "df381151e871f41ee86cee4f5f6fd598b8a68826"
uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d"
version = "3.100.0+3"
[[LZO_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "f128cd6cd05ffd6d3df0523ed99b90ff6f9b349a"
uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac"
version = "2.10.0+3"
[[LaTeXStrings]]
git-tree-sha1 = "c7aebfecb1a60d59c0fe023a68ec947a208b1e6b"
uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
version = "1.2.0"
[[Latexify]]
deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "Printf", "Requires"]
git-tree-sha1 = "3a0084cec7bf157edcb45a67fac0647f88fe5eaf"
uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316"
version = "0.14.7"
[[LibGit2]]
deps = ["Printf"]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
......@@ -334,6 +399,60 @@ version = "1.9.0+1"
[[Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
[[Libffi_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "a2cd088a88c0d37eef7d209fd3d8712febce0d90"
uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490"
version = "3.2.1+4"
[[Libgcrypt_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"]
git-tree-sha1 = "b391a18ab1170a2e568f9fb8d83bc7c780cb9999"
uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4"
version = "1.8.5+4"
[[Libglvnd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"]
git-tree-sha1 = "7739f837d6447403596a75d19ed01fd08d6f56bf"
uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29"
version = "1.3.0+3"
[[Libgpg_error_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "ec7f2e8ad5c9fa99fc773376cdbc86d9a5a23cb7"
uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8"
version = "1.36.0+3"
[[Libiconv_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "8e924324b2e9275a51407a4e06deb3455b1e359f"
uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
version = "1.16.0+7"
[[Libmount_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "51ad0c01c94c1ce48d5cad629425035ad030bfd5"
uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
version = "2.34.0+3"
[[Libtiff_jll]]
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "291dd857901f94d683973cdf679984cdf73b56d0"
uuid = "89763e89-9b03-5906-acba-b20f662cd828"
version = "4.1.0+2"
[[Libuuid_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "f879ae9edbaa2c74c922e8b85bb83cc84ea1450b"
uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700"
version = "2.34.0+7"
[[LineSearches]]
deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"]
git-tree-sha1 = "f27132e551e959b3667d8c93eae90973225032dd"
uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255"
version = "7.1.1"
[[LinearAlgebra]]
deps = ["Libdl"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
......@@ -355,9 +474,9 @@ version = "2020.2.254+0"
[[MacroTools]]
deps = ["Markdown", "Random"]
git-tree-sha1 = "f7d2e3f654af75f01ec49be82c231c382214223a"
git-tree-sha1 = "6a8a2a625ab0dea913aba95c11370589e0239ff0"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
version = "0.5.5"
version = "0.5.6"
[[Markdown]]
deps = ["Base64"]
......@@ -365,15 +484,15 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
[[MbedTLS]]
deps = ["Dates", "MbedTLS_jll", "Random", "Sockets"]
git-tree-sha1 = "426a6978b03a97ceb7ead77775a1da066343ec6e"
git-tree-sha1 = "1c38e51c3d08ef2278062ebceade0e46cefc96fe"
uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
version = "1.0.2"
version = "1.0.3"
[[MbedTLS_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "c0b1286883cac4e2b617539de41111e0776d02e8"
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "0eef589dd1c26a3ac9d753fe1a8bcad63f956fa6"
uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
version = "2.16.8+0"
version = "2.16.8+1"
[[Measures]]
git-tree-sha1 = "e498ddeee6f9fdb4551ce855a46f54dbd900245f"
......@@ -396,9 +515,9 @@ uuid = "d41bc354-129a-5804-8e4c-c37616107c6c"
version = "7.7.1"
[[NaNMath]]
git-tree-sha1 = "c84c576296d0e2fbb3fc134d3e09086b3ea617cd"
git-tree-sha1 = "bfe47e760d60b82b66b61d2d44128b62e3a369fb"
uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "0.3.4"
version = "0.3.5"
[[Nettle]]
deps = ["Libdl", "Nettle_jll"]
......@@ -407,10 +526,10 @@ uuid = "49dea1ee-f6fa-5aa6-9a11-8816cee7d4b9"
version = "0.5.0"
[[Nettle_jll]]
deps = ["GMP_jll", "Libdl", "Pkg"]
git-tree-sha1 = "d69f99a48b9f5722bff9f0fa031f1c916b657017"
deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "b3b169cec36b850cfacbefc0b0a5f68a6089eb70"
uuid = "4c82536e-c426-54e4-b420-14f461c4ed8b"
version = "3.4.1+1"
version = "3.4.1+2"
[[Ogg_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
......@@ -430,6 +549,12 @@ git-tree-sha1 = "9db77584158d0ab52307f8c04f8e7c08ca76b5b3"
uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
version = "0.5.3+4"
[[Optim]]
deps = ["Compat", "FillArrays", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"]
git-tree-sha1 = "8a8208d3a1b97994d15ebcdae235d332b4a69e78"
uuid = "429524aa-4258-5aef-a3af-852621145aeb"
version = "1.2.3"
[[OptimBase]]
deps = ["NLSolversBase", "Printf", "Reexport"]
git-tree-sha1 = "4c26a757fbb5b1893b7df19a44e21762d8f8e470"
......@@ -443,9 +568,15 @@ uuid = "91d4177d-7536-5919-b921-800302f37372"
version = "1.3.1+3"
[[OrderedCollections]]
git-tree-sha1 = "16c08bf5dba06609fe45e30860092d6fa41fde7b"
git-tree-sha1 = "cf59cfed2e2c12e8a2ff0a4f1e9b2cd8650da6db"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.3.1"
version = "1.3.2"
[[PCRE_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "1b556ad51dceefdbf30e86ffa8f528b73c7df2bb"
uuid = "2f80f16e-611a-54ab-bc61-aa92de5b98fc"
version = "8.42.0+4"
[[PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"]
......@@ -466,10 +597,16 @@ uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a"
version = "0.12.1"
[[Parsers]]
deps = ["Dates", "Test"]
git-tree-sha1 = "8077624b3c450b15c087944363606a6ba12f925e"
deps = ["Dates"]
git-tree-sha1 = "50c9a9ed8c714945e01cd53a21007ed3865ed714"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "1.0.10"
version = "1.0.15"
[[Pixman_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "6a20a83c1ae86416f0a5de605eaea08a552844a3"
uuid = "30392449-352a-5448-841d-b1acce4e97dc"
version = "0.40.0+0"
[[Pkg]]
deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"]
......@@ -483,15 +620,21 @@ version = "2.0.0"
[[PlotUtils]]
deps = ["ColorSchemes", "Colors", "Dates", "Printf", "Random", "Reexport", "Statistics"]
git-tree-sha1 = "8d23333aee2e2733a5cd4e1985462df8203f47f7"
git-tree-sha1 = "ae9a295ac761f64d8c2ec7f9f24d21eb4ffba34d"
uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043"
version = "1.0.6"
version = "1.0.10"
[[Plots]]
deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "GeometryTypes", "JSON", "LinearAlgebra", "Measures", "NaNMath", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"]
git-tree-sha1 = "3afcb003034c59f0a2772cdf71fdbb29fcb46d69"
deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "JSON", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"]
git-tree-sha1 = "4797acb266b8d9ff316f4581924e71c6709f152d"
uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
version = "1.6.5"
version = "1.10.1"
[[PositiveFactorizations]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20"
uuid = "85a6dd25-e78a-55b7-8502-1745935b8125"
version = "0.2.4"
[[Printf]]
deps = ["Unicode"]
......@@ -499,9 +642,9 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
[[PyCall]]
deps = ["Conda", "Dates", "Libdl", "LinearAlgebra", "MacroTools", "Serialization", "VersionParsing"]
git-tree-sha1 = "3a3fdb9000d35958c9ba2323ca7c4958901f115d"
git-tree-sha1 = "dd1a970b543bd02efce2984582e996af28cab27f"
uuid = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
version = "1.91.4"
version = "1.92.2"
[[PyPlot]]
deps = ["Colors", "LaTeXStrings", "PyCall", "Sockets", "Test", "VersionParsing"]
......@@ -509,6 +652,12 @@ git-tree-sha1 = "67dde2482fe1a72ef62ed93f8c239f947638e5a2"
uuid = "d330b81b-6aea-500a-939a-2ce795aea3ee"
version = "2.9.0"
[[Qt_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"]
git-tree-sha1 = "7760cfea90bec61814e31dfb204fa4b81bba7b57"
uuid = "ede63266-ebff-546c-83e0-1c6fb6d0efc8"
version = "5.15.2+1"
[[QuadGK]]
deps = ["DataStructures", "LinearAlgebra"]
git-tree-sha1 = "12fbe86da16df6679be7521dfb39fbc861e1dc7b"
......@@ -524,15 +673,15 @@ deps = ["Serialization"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
[[RecipesBase]]
git-tree-sha1 = "6ee6c35fe69e79e17c455a386c1ccdc66d9f7da4"
git-tree-sha1 = "b3fb709f3c97bfc6e948be68beeecb55a0b340ae"
uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
version = "1.1.0"
version = "1.1.1"
[[RecipesPipeline]]
deps = ["Dates", "NaNMath", "PlotUtils", "RecipesBase"]
git-tree-sha1 = "4a325c9bcc2d8e62a8f975b9666d0251d53b63b9"
git-tree-sha1 = "9ea2f5bf1b26918b16e9f885bb8e05206bfc2144"
uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c"
version = "0.1.13"
version = "0.2.1"
[[Reexport]]
deps = ["Pkg"]
......@@ -542,9 +691,9 @@ version = "0.2.0"
[[Requires]]
deps = ["UUIDs"]
git-tree-sha1 = "2fc2e1ab606a5dca7bbad9036a694553c3a57926"
git-tree-sha1 = "cfbac6c1ed70c002ec6361e7fd334f02820d6419"
uuid = "ae029012-a4dd-5104-9daa-d747884805df"
version = "1.0.3"
version = "1.1.2"
[[Rmath]]
deps = ["Random", "Rmath_jll"]
......@@ -560,13 +709,19 @@ version = "0.2.2+1"
[[Roots]]
deps = ["Printf"]
git-tree-sha1 = "1211c7c1928c1ed29cdcef65979b7a791e3b9fbe"
git-tree-sha1 = "8f743e4f4368d1d753f3806bf635899dad6b4847"
uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665"
version = "1.0.5"
version = "1.0.7"
[[SHA]]
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
[[Scratch]]
deps = ["Dates"]
git-tree-sha1 = "ad4b278adb62d185bbcb6864dc24959ab0627bf6"
uuid = "6c6a2e73-6563-6170-7368-637461726353"
version = "1.0.3"
[[Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
......@@ -575,10 +730,10 @@ deps = ["Distributed", "Mmap", "Random", "Serialization"]
uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"
[[Showoff]]
deps = ["Dates"]
git-tree-sha1 = "e032c9df551fb23c9f98ae1064de074111b7bc39"
deps = ["Dates", "Grisu"]
git-tree-sha1 = "ee010d8f103468309b8afac4abb9be2e18ff1182"
uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f"
version = "0.3.1"
version = "0.3.2"
[[Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
......@@ -601,9 +756,9 @@ version = "0.10.3"
[[StaticArrays]]
deps = ["LinearAlgebra", "Random", "Statistics"]
git-tree-sha1 = "016d1e1a00fabc556473b07161da3d39726ded35"
git-tree-sha1 = "da4cf579416c81994afd6322365d00916c79b8ae"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "0.12.4"
version = "0.12.5"
[[Statistics]]
deps = ["LinearAlgebra", "SparseArrays"]
......@@ -611,21 +766,21 @@ uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
[[StatsBase]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"]
git-tree-sha1 = "d72a47c47c522e283db774fc8c459dd5ed773710"
git-tree-sha1 = "7bab7d4eb46b225b35179632852b595a3162cb61"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.33.1"
version = "0.33.2"
[[StatsFuns]]
deps = ["Rmath", "SpecialFunctions"]
git-tree-sha1 = "04a5a8e6ab87966b43f247920eab053fd5fdc925"
git-tree-sha1 = "3b9f665c70712af3264b61c27a7e1d62055dafd1"
uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
version = "0.9.5"
version = "0.9.6"
[[StructArrays]]
deps = ["Adapt", "DataAPI", "Tables"]
git-tree-sha1 = "8099ed9fb90b6e754d6ba8c6ed8670f010eadca0"
deps = ["DataAPI", "Tables"]
git-tree-sha1 = "ad1f5fd155426dcc879ec6ede9f74eb3a2d582df"
uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
version = "0.4.4"
version = "0.4.2"
[[SuiteSparse]]
deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
......@@ -639,9 +794,9 @@ version = "1.0.0"
[[Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
git-tree-sha1 = "b7f762e9820b7fab47544c36f26f54ac59cf8abf"
git-tree-sha1 = "240d19b8762006ff04b967bdd833269ad642d550"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.0.5"
version = "1.2.2"
[[Test]]
deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]
......@@ -670,11 +825,167 @@ git-tree-sha1 = "80229be1f670524750d905f8fc8148e5a8c4537f"
uuid = "81def892-9a0e-5fdd-b105-ffc91e053289"
version = "1.2.0"
[[Wayland_jll]]
deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"]
git-tree-sha1 = "dc643a9b774da1c2781413fd7b6dcd2c56bb8056"
uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89"
version = "1.17.0+4"
[[Wayland_protocols_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll"]
git-tree-sha1 = "2839f1c1296940218e35df0bbb220f2a79686670"
uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91"
version = "1.18.0+4"
[[XML2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"]
git-tree-sha1 = "be0db24f70aae7e2b89f2f3092e93b8606d659a6"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
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[[XSLT_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Pkg", "XML2_jll"]
git-tree-sha1 = "2b3eac39df218762d2d005702d601cd44c997497"
uuid = "aed1982a-8fda-507f-9586-7b0439959a61"
version = "1.1.33+4"
[[Xorg_libX11_jll]]
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git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527"
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[[Xorg_libXau_jll]]
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[[Xorg_libXcursor_jll]]
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[[Xorg_libXdmcp_jll]]
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[[Xorg_libXext_jll]]
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[[Xorg_libXfixes_jll]]
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[[Xorg_libXi_jll]]
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[[Xorg_libXinerama_jll]]
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[[Xorg_libXrandr_jll]]
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[[Xorg_libpthread_stubs_jll]]
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[[Xorg_libxcb_jll]]
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[[Xorg_libxkbfile_jll]]
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uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a"
version = "1.1.0+4"
[[Xorg_xcb_util_image_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97"
uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b"
version = "0.4.0+1"
[[Xorg_xcb_util_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"]
git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1"
uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5"
version = "0.4.0+1"
[[Xorg_xcb_util_keysyms_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00"
uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7"
version = "0.4.0+1"
[[Xorg_xcb_util_renderutil_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e"
uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e"
version = "0.3.9+1"
[[Xorg_xcb_util_wm_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67"
uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361"
version = "0.4.1+1"
[[Xorg_xkbcomp_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxkbfile_jll"]
git-tree-sha1 = "4bcbf660f6c2e714f87e960a171b119d06ee163b"
uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4"
version = "1.4.2+4"
[[Xorg_xkeyboard_config_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xkbcomp_jll"]
git-tree-sha1 = "5c8424f8a67c3f2209646d4425f3d415fee5931d"
uuid = "33bec58e-1273-512f-9401-5d533626f822"
version = "2.27.0+4"
[[Xorg_xtrans_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845"
uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
version = "1.4.0+3"
[[Zlib_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "ded43825988ace7a311ee7e1d0f09571822509c4"
git-tree-sha1 = "320228915c8debb12cb434c59057290f0834dbf6"
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.11+17"
version = "1.2.11+18"
[[Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "6f1abcb0c44f184690912aa4b0ba861dd64f11b9"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.4.5+2"
[[libass_jll]]
deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
......@@ -688,6 +999,12 @@ git-tree-sha1 = "7a5780a0d9c6864184b3a2eeeb833a0c871f00ab"
uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
version = "0.1.6+4"
[[libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
git-tree-sha1 = "6abbc424248097d69c0c87ba50fcb0753f93e0ee"
uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
version = "1.6.37+6"
[[libvorbis_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
git-tree-sha1 = "fa14ac25af7a4b8a7f61b287a124df7aab601bcd"
......@@ -705,3 +1022,9 @@ deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "487da2f8f2f0c8ee0e83f39d13037d6bbf0a45ab"
uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"
version = "3.0.0+3"
[[xkbcommon_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"]
git-tree-sha1 = "ece2350174195bb31de1a63bea3a41ae1aa593b6"
uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd"
version = "0.9.1+5"
Project.toml
View file @ 585fdb68
......@@ -9,5 +9,6 @@ BDIO = "375f315e-f2c4-11e9-2ef9-134f02f79e27"
LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
LsqFit = "2fda8390-95c7-5789-9bda-21331edee243"
Optim = "429524aa-4258-5aef-a3af-852621145aeb"
PyPlot = "d330b81b-6aea-500a-939a-2ce795aea3ee"
Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
src/juobs.jl
View file @ 585fdb68
module juobs
using ADerrors, PyPlot, LaTeXStrings, LinearAlgebra, LsqFit
using ADerrors, PyPlot, LaTeXStrings, LinearAlgebra, LsqFit, Optim
import Statistics: mean
include("juobs_types.jl")
......
src/juobs_tools.jl
View file @ 585fdb68
......@@ -249,7 +249,7 @@ The method return an array upar with the best fit parameters with their errors.
@. model(x,p) = p[1] + p[2] * exp(-(p[3]-p[1])*x)
fit_routine(model, ydata, param=3)
"""
function fit_routine(model::Function, xdata::Array{<:Real}, ydata::Array{uwreal}, param::Int64=3; wpm::Union{Dict{Int64,Vector{Float64}},Dict{String,Vector{Float64}}, Nothing}=nothing )
function fit_routine(model::Function, xdata::Array{<:Real}, ydata::Array{uwreal}, param::Int64=3; wpm::Union{Dict{Int64,Vector{Float64}},Dict{String,Vector{Float64}}, Nothing}=nothing)
uwerr.(ydata)
yval = value.(ydata)
yer = err.(ydata)
......@@ -268,6 +268,65 @@ function gen_chisq(f::Function, x::Array{<:Real}, err::Vector{Float64})
chisq(par, dat) = sum((dat .- f(x,par)).^2 ./err.^2)
return chisq
end
#TODO: COMBINED FITS, COVARIANCE X-Y
function fit_routine(model::Function, xdata::Array{uwreal}, ydata::Array{uwreal}, param::Int64=3; wpm::Union{Dict{Int64,Vector{Float64}},Dict{String,Vector{Float64}}, Nothing}=nothing)
uwerr.(ydata)
yval = value.(ydata)
yer = err.(ydata)
uwerr.(xdata)
xval = value.(xdata)
xer = err.(xdata)
dat = vcat(xval, yval)
ddat = vcat(xer, yer)
data = vcat(xdata, ydata)
#guess
fit = curve_fit(model, xval, yval, 1.0 ./ yer.^2, fill(0.5, param))
chisq_full(p, d) = get_chi2(model, d, ddat, p)
min_fun(t) = chisq_full(t, dat)
sol = optimize(min_fun, vcat(fit.param, xval), method=LBFGS())
(upar, chi2_exp) = isnothing(wpm) ? fit_error(chisq_full, Optim.minimizer(sol), data) : fit_error(chisq_full, Optim.minimizer(sol), data, wpm)
for i = 1:length(upar)
uwerr(upar[i])
print("\n Fit parameter: ", i, ": ")
details(upar[i])
end
println("Chisq / chiexp: ", sol.minimum, " / ", chi2_exp, " (dof: ", dof(fit),")")
return upar
end
function get_chi2(f::Function, x, dx, y, dy, par) #full
chi2 = 0.0
Ndata = length(x)
Npar = length(par) - Ndata
p = par[1:Npar]
for k = 1:Ndata
xx = par[Npar + k]
yy = f(xx, p)
delta = [x[k] - xx, y[k] - yy]
C = [[1/dx[k]^2, 0.0] [0.0, 1/dy[k]^2]]
chi2 += delta' * C * delta
end
return chi2
end
function get_chi2(f::Function, data, ddata, par) #full
Ndata = div(length(data), 2)
x = data[1:Ndata]
y = data[Ndata+1:end]
dx = ddata[1:Ndata]
dy = ddata[Ndata+1:end]
return get_chi2(f, x, dx, y, dy, par)
end
#=
using LsqFit
@doc raw"""
......
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