Skip to content

J
juobs
Commit 5b835f83 authored by Javier's avatar Javier
Browse files
Options

Initial commit

parents
Hide whitespace changes
Inline Side-by-side
Showing with 1048 additions and 0 deletions
Manifest.toml 0 → 100644
View file @ 5b835f83
# This file is machine-generated - editing it directly is not advised
[[ADerrors]]
deps = ["BDIO", "FFTW", "FastGaussQuadrature", "ForwardDiff", "LaTeXStrings", "LinearAlgebra", "Nettle", "PGFPlotsX", "Plots", "Printf", "QuadGK", "Roots", "Statistics", "Test", "UnicodePlots"]
git-tree-sha1 = "41a28e14db83616ec087d36eb6d7fc13db4d00ea"
repo-rev = "master"
repo-url = "https://gitlab.ift.uam-csic.es/alberto/aderrors.jl"
uuid = "5e92007d-7bf1-471c-8ceb-4591b8b567a9"
version = "0.1.0"
[[AbstractFFTs]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "051c95d6836228d120f5f4b984dd5aba1624f716"
uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c"
version = "0.5.0"
[[Adapt]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "0fac443759fa829ed8066db6cf1077d888bb6573"
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
version = "2.0.2"
[[ArgCheck]]
git-tree-sha1 = "dedbbb2ddb876f899585c4ec4433265e3017215a"
uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197"
version = "2.1.0"
[[BDIO]]
deps = ["Documenter", "Nettle"]
git-tree-sha1 = "75d5a8b933ac4169400c49e6f679af1a31a87cc8"
repo-rev = "master"
repo-url = "https://gitlab.ift.uam-csic.es/alberto/bdio.jl"
uuid = "375f315e-f2c4-11e9-2ef9-134f02f79e27"
version = "0.1.0"
[[Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
[[Bzip2_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "03a44490020826950c68005cafb336e5ba08b7e8"
uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
version = "1.0.6+4"
[[ColorSchemes]]
deps = ["ColorTypes", "Colors", "FixedPointNumbers", "Random", "StaticArrays"]
git-tree-sha1 = "7a15e3690529fd1042f0ab954dff7445b1efc8a5"
uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
version = "3.9.0"
[[ColorTypes]]
deps = ["FixedPointNumbers", "Random"]
git-tree-sha1 = "4bffea7ed1a9f0f3d1a131bbcd4b925548d75288"
uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f"
version = "0.10.9"
[[Colors]]
deps = ["ColorTypes", "FixedPointNumbers", "InteractiveUtils", "Reexport"]
git-tree-sha1 = "008d6bc68dea6beb6303fdc37188cb557391ebf2"
uuid = "5ae59095-9a9b-59fe-a467-6f913c188581"
version = "0.12.4"
[[CommonSubexpressions]]
deps = ["MacroTools", "Test"]
git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7"
uuid = "bbf7d656-a473-5ed7-a52c-81e309532950"
version = "0.3.0"
[[CompilerSupportLibraries_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "7c4f882c41faa72118841185afc58a2eb00ef612"
uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
version = "0.3.3+0"
[[Contour]]
deps = ["StaticArrays"]
git-tree-sha1 = "81685fee51fc5168898e3cbd8b0f01506cd9148e"
uuid = "d38c429a-6771-53c6-b99e-75d170b6e991"
version = "0.5.4"
[[Crayons]]
git-tree-sha1 = "3f71217b538d7aaee0b69ab47d9b7724ca8afa0d"
uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
version = "4.0.4"
[[DataAPI]]
git-tree-sha1 = "176e23402d80e7743fc26c19c681bfb11246af32"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.3.0"
[[DataStructures]]
deps = ["InteractiveUtils", "OrderedCollections"]
git-tree-sha1 = "88d48e133e6d3dd68183309877eac74393daa7eb"
uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
version = "0.17.20"
[[DataValueInterfaces]]
git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464"
version = "1.0.0"
[[Dates]]
deps = ["Printf"]
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
[[DefaultApplication]]
deps = ["InteractiveUtils"]
git-tree-sha1 = "fc2b7122761b22c87fec8bf2ea4dc4563d9f8c24"
uuid = "3f0dd361-4fe0-5fc6-8523-80b14ec94d85"
version = "1.0.0"
[[DelimitedFiles]]
deps = ["Mmap"]
uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
[[DiffResults]]
deps = ["StaticArrays"]
git-tree-sha1 = "da24935df8e0c6cf28de340b958f6aac88eaa0cc"
uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5"
version = "1.0.2"
[[DiffRules]]
deps = ["NaNMath", "Random", "SpecialFunctions"]
git-tree-sha1 = "eb0c34204c8410888844ada5359ac8b96292cfd1"
uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
version = "1.0.1"
[[Distributed]]
deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
[[DocStringExtensions]]
deps = ["LibGit2", "Markdown", "Pkg", "Test"]
git-tree-sha1 = "50ddf44c53698f5e784bbebb3f4b21c5807401b1"
uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
version = "0.8.3"
[[Documenter]]
deps = ["Base64", "Dates", "DocStringExtensions", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"]
git-tree-sha1 = "fb1ff838470573adc15c71ba79f8d31328f035da"
uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
version = "0.25.2"
[[FFMPEG]]
deps = ["FFMPEG_jll", "x264_jll"]
git-tree-sha1 = "9a73ffdc375be61b0e4516d83d880b265366fe1f"
uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a"
version = "0.4.0"
[[FFMPEG_jll]]
deps = ["Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "LAME_jll", "LibVPX_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "Pkg", "Zlib_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
git-tree-sha1 = "13a934b9e74a8722bf1786c989de346a9602e695"
uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5"
version = "4.3.1+2"
[[FFTW]]
deps = ["AbstractFFTs", "FFTW_jll", "IntelOpenMP_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Reexport"]
git-tree-sha1 = "8b7c16b56936047ca41bf25effa137ae0b381ae8"
uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
version = "1.2.4"
[[FFTW_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "6c975cd606128d45d1df432fb812d6eb10fee00b"
uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a"
version = "3.3.9+5"
[[FastGaussQuadrature]]
deps = ["LinearAlgebra", "SpecialFunctions"]
git-tree-sha1 = "c139e3f4c75dc489a493627c7ee44befc177420f"
uuid = "442a2c76-b920-505d-bb47-c5924d526838"
version = "0.4.2"
[[FixedPointNumbers]]
deps = ["Statistics"]
git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc"
uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93"
version = "0.8.4"
[[ForwardDiff]]
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "NaNMath", "Random", "SpecialFunctions", "StaticArrays"]
git-tree-sha1 = "1d090099fb82223abc48f7ce176d3f7696ede36d"
uuid = "f6369f11-7733-5829-9624-2563aa707210"
version = "0.10.12"
[[FreeType2_jll]]
deps = ["Bzip2_jll", "Libdl", "Pkg", "Zlib_jll"]
git-tree-sha1 = "720eee04e3b496c15e5e2269669c2532fb5005c0"
uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7"
version = "2.10.1+4"
[[FriBidi_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "cfc3485a0a968263c789e314fca5d66daf75ed6c"
uuid = "559328eb-81f9-559d-9380-de523a88c83c"
version = "1.0.5+5"
[[GMP_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "4dd9301d3a027c05ec403e756ee7a60e3c367e5d"
uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d"
version = "6.1.2+5"
[[GR]]
deps = ["Base64", "DelimitedFiles", "HTTP", "JSON", "LinearAlgebra", "Printf", "Random", "Serialization", "Sockets", "Test", "UUIDs"]
git-tree-sha1 = "cd0f34bd097d4d5eb6bbe01778cf8a7ed35f29d9"
uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
version = "0.52.0"
[[GeometryBasics]]
deps = ["IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"]
git-tree-sha1 = "119f32f9c2b497b49cd3f7f513b358b82660294c"
uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
version = "0.2.15"
[[GeometryTypes]]
deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "StaticArrays"]
git-tree-sha1 = "34bfa994967e893ab2f17b864eec221b3521ba4d"
uuid = "4d00f742-c7ba-57c2-abde-4428a4b178cb"
version = "0.8.3"
[[HTTP]]
deps = ["Base64", "Dates", "IniFile", "MbedTLS", "Sockets"]
git-tree-sha1 = "2ac03263ce44be4222342bca1c51c36ce7566161"
uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
version = "0.8.17"
[[IniFile]]
deps = ["Test"]
git-tree-sha1 = "098e4d2c533924c921f9f9847274f2ad89e018b8"
uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f"
version = "0.5.0"
[[IntelOpenMP_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "fb8e1c7a5594ba56f9011310790e03b5384998d6"
uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0"
version = "2018.0.3+0"
[[InteractiveUtils]]
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
[[IterTools]]
git-tree-sha1 = "05110a2ab1fc5f932622ffea2a003221f4782c18"
uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e"
version = "1.3.0"
[[IteratorInterfaceExtensions]]
git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0"
[[JSON]]
deps = ["Dates", "Mmap", "Parsers", "Unicode"]
git-tree-sha1 = "81690084b6198a2e1da36fcfda16eeca9f9f24e4"
uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
version = "0.21.1"
[[LAME_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "a7999edc634307964d5651265ebf7c2e14b4ef91"
uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d"
version = "3.100.0+2"
[[LaTeXStrings]]
git-tree-sha1 = "de44b395389b84fd681394d4e8d39ef14e3a2ea8"
uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
version = "1.1.0"
[[LibGit2]]
deps = ["Printf"]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
[[LibVPX_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "e02378f5707d0f94af22b99e4aba798e20368f6e"
uuid = "dd192d2f-8180-539f-9fb4-cc70b1dcf69a"
version = "1.9.0+0"
[[Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
[[LinearAlgebra]]
deps = ["Libdl"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
[[Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
[[MKL_jll]]
deps = ["IntelOpenMP_jll", "Libdl", "Pkg"]
git-tree-sha1 = "eb540ede3aabb8284cb482aa41d00d6ca850b1f8"
uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
version = "2020.2.254+0"
[[MacroTools]]
deps = ["Markdown", "Random"]
git-tree-sha1 = "f7d2e3f654af75f01ec49be82c231c382214223a"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
version = "0.5.5"
[[Markdown]]
deps = ["Base64"]
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
[[MbedTLS]]
deps = ["Dates", "MbedTLS_jll", "Random", "Sockets"]
git-tree-sha1 = "426a6978b03a97ceb7ead77775a1da066343ec6e"
uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
version = "1.0.2"
[[MbedTLS_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "c0b1286883cac4e2b617539de41111e0776d02e8"
uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
version = "2.16.8+0"
[[Measures]]
git-tree-sha1 = "e498ddeee6f9fdb4551ce855a46f54dbd900245f"
uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e"
version = "0.3.1"
[[Missings]]
deps = ["DataAPI"]
git-tree-sha1 = "ed61674a0864832495ffe0a7e889c0da76b0f4c8"
uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
version = "0.4.4"
[[Mmap]]
uuid = "a63ad114-7e13-5084-954f-fe012c677804"
[[NaNMath]]
git-tree-sha1 = "c84c576296d0e2fbb3fc134d3e09086b3ea617cd"
uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "0.3.4"
[[Nettle]]
deps = ["Libdl", "Nettle_jll"]
git-tree-sha1 = "e2245e51677ff3fc46ee87470d63212e22b36df7"
uuid = "49dea1ee-f6fa-5aa6-9a11-8816cee7d4b9"
version = "0.5.0"
[[Nettle_jll]]
deps = ["GMP_jll", "Libdl", "Pkg"]
git-tree-sha1 = "d69f99a48b9f5722bff9f0fa031f1c916b657017"
uuid = "4c82536e-c426-54e4-b420-14f461c4ed8b"
version = "3.4.1+1"
[[Ogg_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "4c3275cda1ba99d1244d0b82a9d0ca871c3cf66b"
uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051"
version = "1.3.4+1"
[[OpenSSL_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "997359379418d233767f926ea0c43f0e731735c0"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "1.1.1+5"
[[OpenSpecFun_jll]]
deps = ["CompilerSupportLibraries_jll", "Libdl", "Pkg"]
git-tree-sha1 = "d51c416559217d974a1113522d5919235ae67a87"
uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
version = "0.5.3+3"
[[Opus_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "cc90a125aa70dbb069adbda2b913b02cf2c5f6fe"
uuid = "91d4177d-7536-5919-b921-800302f37372"
version = "1.3.1+2"
[[OrderedCollections]]
git-tree-sha1 = "293b70ac1780f9584c89268a6e2a560d938a7065"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.3.0"
[[PGFPlotsX]]
deps = ["ArgCheck", "DataStructures", "Dates", "DefaultApplication", "DocStringExtensions", "MacroTools", "Parameters", "Requires", "Tables"]
git-tree-sha1 = "1adde3d07cce96b6a3bb88572612db4bd9d6153b"
uuid = "8314cec4-20b6-5062-9cdb-752b83310925"
version = "1.2.10"
[[Parameters]]
deps = ["OrderedCollections", "UnPack"]
git-tree-sha1 = "38b2e970043613c187bd56a995fe2e551821eb4a"
uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a"
version = "0.12.1"
[[Parsers]]
deps = ["Dates", "Test"]
git-tree-sha1 = "8077624b3c450b15c087944363606a6ba12f925e"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "1.0.10"
[[Pkg]]
deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
[[PlotThemes]]
deps = ["PlotUtils", "Requires", "Statistics"]
git-tree-sha1 = "c6f5ea535551b3b16835134697f0c65d06c94b91"
uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a"
version = "2.0.0"
[[PlotUtils]]
deps = ["ColorSchemes", "Colors", "Dates", "Printf", "Random", "Reexport", "Statistics"]
git-tree-sha1 = "8d23333aee2e2733a5cd4e1985462df8203f47f7"
uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043"
version = "1.0.6"
[[Plots]]
deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "GeometryTypes", "JSON", "LinearAlgebra", "Measures", "NaNMath", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"]
git-tree-sha1 = "b81e3dfb1f0ece1e170b8768d2d0f10a78dfb4d7"
uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
version = "1.6.3"
[[Printf]]
deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
[[QuadGK]]
deps = ["DataStructures", "LinearAlgebra"]
git-tree-sha1 = "12fbe86da16df6679be7521dfb39fbc861e1dc7b"
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
version = "2.4.1"
[[REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets"]
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
[[Random]]
deps = ["Serialization"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
[[RecipesBase]]
git-tree-sha1 = "58de8f7e33b7fda6ee39eff65169cd1e19d0c107"
uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
version = "1.0.2"
[[RecipesPipeline]]
deps = ["Dates", "NaNMath", "PlotUtils", "RecipesBase"]
git-tree-sha1 = "4a325c9bcc2d8e62a8f975b9666d0251d53b63b9"
uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c"
version = "0.1.13"
[[Reexport]]
deps = ["Pkg"]
git-tree-sha1 = "7b1d07f411bc8ddb7977ec7f377b97b158514fe0"
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "0.2.0"
[[Requires]]
deps = ["UUIDs"]
git-tree-sha1 = "8c08d0c7812169e438a8478dae2a529377ad13f7"
uuid = "ae029012-a4dd-5104-9daa-d747884805df"
version = "1.0.2"
[[Roots]]
deps = ["Printf"]
git-tree-sha1 = "1211c7c1928c1ed29cdcef65979b7a791e3b9fbe"
uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665"
version = "1.0.5"
[[SHA]]
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
[[Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
[[Showoff]]
deps = ["Dates"]
git-tree-sha1 = "e032c9df551fb23c9f98ae1064de074111b7bc39"
uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f"
version = "0.3.1"
[[Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
[[SortingAlgorithms]]
deps = ["DataStructures", "Random", "Test"]
git-tree-sha1 = "03f5898c9959f8115e30bc7226ada7d0df554ddd"
uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
version = "0.3.1"
[[SparseArrays]]
deps = ["LinearAlgebra", "Random"]
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
[[SpecialFunctions]]
deps = ["OpenSpecFun_jll"]
git-tree-sha1 = "d8d8b8a9f4119829410ecd706da4cc8594a1e020"
uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
version = "0.10.3"
[[StaticArrays]]
deps = ["LinearAlgebra", "Random", "Statistics"]
git-tree-sha1 = "016d1e1a00fabc556473b07161da3d39726ded35"
uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "0.12.4"
[[Statistics]]
deps = ["LinearAlgebra", "SparseArrays"]
uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
[[StatsBase]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"]
git-tree-sha1 = "19bfcb46245f69ff4013b3df3b977a289852c3a1"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.32.2"
[[StructArrays]]
deps = ["Adapt", "DataAPI", "Tables"]
git-tree-sha1 = "8099ed9fb90b6e754d6ba8c6ed8670f010eadca0"
uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
version = "0.4.4"
[[TableTraits]]
deps = ["IteratorInterfaceExtensions"]
git-tree-sha1 = "b1ad568ba658d8cbb3b892ed5380a6f3e781a81e"
uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
version = "1.0.0"
[[Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
git-tree-sha1 = "b7f762e9820b7fab47544c36f26f54ac59cf8abf"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.0.5"
[[Test]]
deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
[[UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
[[UnPack]]
git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b"
uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed"
version = "1.0.2"
[[Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
[[UnicodePlots]]
deps = ["Crayons", "Dates", "SparseArrays", "StatsBase"]
git-tree-sha1 = "af0c29913f108f649999e74098814c7ef0f644de"
uuid = "b8865327-cd53-5732-bb35-84acbb429228"
version = "1.2.0"
[[Zlib_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "fdd89e5ab270ea0f2a0174bd9093e557d06d4bfa"
uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.11+16"
[[libass_jll]]
deps = ["Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "Libdl", "Pkg", "Zlib_jll"]
git-tree-sha1 = "f02d0db58888592e98c5f4953cef620ce9274eee"
uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0"
version = "0.14.0+3"
[[libfdk_aac_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "e17b4513993b4413d31cffd1b36a63625ebbc3d3"
uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
version = "0.1.6+3"
[[libvorbis_jll]]
deps = ["Libdl", "Ogg_jll", "Pkg"]
git-tree-sha1 = "8014e1c1033009edcfe820ec25877a9f1862ba4c"
uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
version = "1.3.6+5"
[[x264_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "e496625b900df1b02ab0e02fad316b77446616ef"
uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
version = "2020.7.14+1"
[[x265_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "ac7d44fa1639a780d0ae79ca1a5a7f4181131825"
uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"
version = "3.0.0+2"
Project.toml 0 → 100644
View file @ 5b835f83
name = "juobs"
uuid = "3399d769-80ea-4938-a2f8-b7fb0ead32c9"
authors = ["Javier <j.ugarrio@gmail.com>"]
version = "0.1.0"
[deps]
ADerrors = "5e92007d-7bf1-471c-8ceb-4591b8b567a9"
BDIO = "375f315e-f2c4-11e9-2ef9-134f02f79e27"
Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
README.md 0 → 100644
View file @ 5b835f83
# juobs
Analysis code (Julia)
\ No newline at end of file
src/juobs.jl 0 → 100644
View file @ 5b835f83
module juobs
using ADerrors, Plots, Statistics
include("juobs_types.jl")
include("juobs_reader.jl")
include("juobs_tools.jl")
export read_mesons, read_ms1
export meff, plat_av, apply_rw, corr_obs
end # module
src/juobs_reader.jl 0 → 100644
View file @ 5b835f83
function read_global_header(path::String)
data = open(path, "r")
g_header = zeros(Int32, 4)
read!(data, g_header)
close(data)
a = GHeader(g_header)
return a
end
function read_CHeader(path::String)
gh = read_global_header(path)
data = open(path, "r")
seek(data, gh.hsize)
aux_f = zeros(Float64, 6)
aux_i = zeros(Int32, 4)
theta = zeros(Float64, 6)
a = Vector{CHeader}(undef, gh.ncorr)
for k = 1:gh.ncorr
read!(data, aux_f)
read!(data, theta)
qs1 = read(data, Int32)
if qs1 != 0
qn1 = read(data, Int32)
qeps1 = read(data, Float64)
q1 = Sm(qs1, qn1, qeps1, 1)
else
q1 = Sm(qs1, 1)
end
qs2 = read(data, Int32)
if qs2 != 0
qn2 = read(data, Int32)
qeps2 = read(data, Float64)
q2 = Sm(qs2, qn2, qeps2, 1)
else
q2 = Sm(qs2, 1)
end
gs1 = read(data, Int32)
if gs1 != 0 && gs1 != 3 && gs1 != 4
gn1 = read(data, Int32)
geps1 = read(data, Float64)
g1 = Sm(gs1, gn1, geps1, 2)
elseif gs1 == 3 || gs1 == 4
g1 = Sm(gs1, q1.niter, q1.eps, 2)
else
g1 = Sm(gs1, 2)
end
gs2 = read(data, Int32)
if gs2 != 0 && gs2 != 3 && gs2 != 4
gn2 = read(data, Int32)
geps2 = read(data, Float64)
g2 = Sm(gs2, gn2, geps2, 2)
elseif gs1 == 3 || gs1 == 4
g2 = Sm(gs2, q2.niter, q2.eps, 2)
else
g2 = Sm(gs2, 2)
end
read!(data, aux_i)
a[k] = CHeader(aux_f, aux_i, theta, [q1, q2, g1, g2])
end
close(data)
return a
end
function read_mesons(path::String, g1::Union{String, Nothing}=nothing, g2::Union{String, Nothing}=nothing; id::Union{Int, Nothing}=nothing)
isnothing(g1) ? t1=nothing : t1 = findfirst(x-> x==g1, gamma_name) - 1
isnothing(g2) ? t2=nothing : t2 = findfirst(x-> x==g2, gamma_name) - 1
if isnothing(id)
bname = basename(path)
m = findfirst(r"[A-Z][0-9]{3}r[0-9]{3}", bname)
id = parse(Int64, bname[m[2:4]])
end
data = open(path, "r")
g_header = read_global_header(path)
c_header = read_CHeader(path)
ncorr = g_header.ncorr
tvals = g_header.tvals
nnoise = g_header.nnoise
fsize = filesize(path)
datsize = 4 + sum(c.dsize for c in c_header)*tvals*nnoise #datasize / ncnfg
ncfg = Int32((fsize-g_header.hsize-sum(c.hsize for c in c_header)) / datsize)
corr_match = findall(x-> (x.type1==t1 || isnothing(t1)) && (x.type2==t2 || isnothing(t2)), c_header)
seek(data, g_header.hsize + sum(c.hsize for c in c_header))
res = Array{CData}(undef, length(corr_match))
data_re = Array{Float64}(undef, length(corr_match), ncfg, tvals)
data_im = zeros(length(corr_match), ncfg, tvals)
vcfg = Array{Int32}(undef, ncfg)
for icfg = 1:ncfg
vcfg[icfg] = read(data, Int32)
c=1
for k = 1:ncorr
if k in corr_match
if c_header[k].is_real == 1
tmp = Array{Float64}(undef, tvals*nnoise)
read!(data, tmp)
tmp2 = reshape(tmp, (nnoise, tvals))
tmp2 = mean(tmp2, dims=1)
data_re[c, icfg, :] = tmp2[1, :]
elseif c_header[k].is_real == 0
tmp = Array{Float64}(undef, 2*tvals*nnoise)
read!(data, tmp)
tmp2 = reshape(tmp, (2, nnoise, tvals))
tmp2 = mean(tmp2, dims=2)
data_re[c, icfg, :] = tmp2[1, 1, :]
data_im[c, icfg, :] = tmp2[2, 1, :]
end
c += 1
else
seek(data, position(data) + c_header[k].dsize*tvals*nnoise)
end
end
end
for c in 1:length(corr_match)
res[c] = CData(c_header[corr_match[c]], vcfg, data_re[c, :, :], data_im[c, :, :], id)
end
close(data)
return res
end
function read_ms1(path::String, v::String="1.2")
data = open(path, "r")
nrw = read(data, Int32)
if v == "1.4" || v =="1.6"
nfct = Array{Int32}(undef, nrw)
read!(data, nfct)
nfct_inheader = 1
elseif v=="1.2"
nfct = ones(Int32, nrw)
nfct_inheader = 0
else
println("Error: Version not supported")
return nothing
end
nsrc = Array{Int32}(undef, nrw)
read!(data, nsrc)
glob_head_size = 4 + 4*nrw*(nfct_inheader + 1)
datsize = 4 + 2*8*sum(nsrc .* nfct)
fsize = filesize(path)
ncnfg = Int32((fsize - glob_head_size)/datsize)
r_data = Array{Array{Float64}}(undef, nrw)
[r_data[k] = zeros(Float64, nfct[k], nsrc[k], ncnfg) for k = 1:nrw]
vcfg = Array{Int32}(undef, ncnfg)
for icfg = 1:ncnfg
vcfg[icfg] = read(data, Int32)
for irw = 1:nrw
for ifct = 1:nfct[irw]
tmp = zeros(Float64, nsrc[irw])
seek(data, position(data) + 8 * nsrc[irw])
read!(data, tmp)
r_data[irw][ifct, :, icfg] = tmp[:]
end
end
end
W = zeros(Float64, nrw, ncnfg)
[W[k, :] = prod(mean(exp.(.-r_data[k]), dims=2), dims=1) for k = 1:nrw]
close(data)
return W
end
\ No newline at end of file
src/juobs_tools.jl 0 → 100644
View file @ 5b835f83
function plat_av(obs::Vector{uwreal}, plat::Vector{Int64})
uwerr.(obs)
w = 1 ./ err.(obs)[plat[1]:plat[2]].^2
av = sum(w .* obs[plat[1]:plat[2]]) / sum(w)
return av
end
function meff(obs::Vector{uwreal}, plat::Vector{Int64})
dim = length(obs)
aux = log.(obs[1:dim-1] ./ obs[2:dim])
mass = plat_av(aux, plat)
uwerr(mass)
return mass
end
function apply_rw(cdata::CData, W::Array{Float64})
W1 = W[1, :]
W2 = W[2, :]
cdata_r = copy(cdata)
cdata_r.re_data = cdata.re_data .* W1 .* W2 / mean(W1 .* W2)
cdata_r.im_data = cdata.im_data .* W1 .* W2 / mean(W1 .* W2)
return cdata_r
end
function apply_rw(data::Array{Float64}, W::Array{Float64})
W1 = W[1, :]
W2 = W[2, :]
data_r = data .* W1 .* W2 / mean(W1 .* W2)
return data_r
end
function corr_obs(cdata::CData; real::Bool=true, rw::Union{Array{Float64}, Nothing}=nothing)
real ? data = cdata.re_data : data = cdata.im_data
isnothing(rw) ? data_r = data : data_r = apply_rw(data, rw)
nt = size(data)[2]
obs = Vector{uwreal}(undef, nt)
[obs[x0] = uwreal(data_r[:, x0], cdata.id) for x0 = 1:nt]
return Corr(obs, cdata)
end
#function corr_obs for R != 1
#TODO: vcfg with gaps
function corr_obs(cdata::Array{CData, 1}; real::Bool=true, rw::Union{Array{Array{Float64, 2}, 1}, Nothing}=nothing)
nr = length(cdata)
id = getfield.(cdata, Symbol("id"))
vcfg = getfield.(cdata, Symbol("vcfg"))
replica = Int64.(maximum.(vcfg))
if !all(id .== id[1])
println("IDs are not equal")
return nothing
end
real ? data = getfield.(cdata, Symbol("re_data")) : data = getfield.(cdata, Symbol("im_data"))
isnothing(rw) ? data_r = data : data_r = apply_rw.(data, rw)
tmp = data_r[1]
[tmp = cat(tmp, data_r[k], dims=1) for k = 2:nr]
nt = size(data[1])[2]
obs = Vector{uwreal}(undef, nt)
[obs[x0] = uwreal(tmp[:, x0], id[1], replica) for x0 = 1:nt]
return Corr(obs, cdata)
end
\ No newline at end of file
src/juobs_types.jl 0 → 100644
View file @ 5b835f83
##############UTILITY NAMES##############
#= STARTING AT 0
noise_name=['Z2', 'GAUSS', 'U1', 'Z4']
gamma_name = ['G0', 'G1', 'G2', 'G3',
'invalid', 'G5', '1', 'G0G1', 'G0G2', 'G0G3',
'G0G5', 'G1G2', 'G1G3', 'G1G5', 'G2G3', 'G2G5', 'G3G5']
# quark and gauge Smearing types
qs_name=['Local', 'Wuppertal', '3D Gradient Flow', 'Gradient Flow']
gs_name=['Local', 'APE', '3D Wilson Flow', 'Quark 3D Gradient Flow', 'Quark Gradient Flow']
=#
const noise_name=["Z2", "GAUSS", "U1", "Z4"]
const gamma_name = ["G0", "G1", "G2", "G3",
"invalid", "G5", "1", "G0G1", "G0G2", "G0G3",
"G0G5", "G1G2", "G1G3", "G1G5", "G2G3", "G2G5", "G3G5"]
const qs_name=["Local", "Wuppertal", "3D Gradient Flow", "Gradient Flow"]
const gs_name=["Local", "APE", "3D Wilson Flow", "Quark 3D Gradient Flow", "Quark Gradient Flow"]
mutable struct GHeader
ncorr::Int32
nnoise::Int32
tvals::Int32
noisetype::Int32
hsize::Int32 #headersize
GHeader(a, b, c, d) = new(a, b, c, d, 4*4)
function GHeader(x::Vector{Int32})
a = new(x[1], x[2], x[3], x[4], 4*4)
return a
end
end
mutable struct Sm
type::Int32
niter::Int32
eps::Float64
qg::Int32 #1->fermionic 2->gluonic
Sm(t,q) = new(t, 0, 0.0, q)
Sm(t, n, e, q) = new(t, n, e, q)
end
mutable struct CHeader
k1::Float64
k2::Float64
mu1::Float64
mu2::Float64
dp1::Float64
dp2::Float64
theta1::Vector{Float64}
theta2::Vector{Float64}
q1::Sm
q2::Sm
g1::Sm
g2::Sm
type1::Int32
type2::Int32
x0::Int32
is_real::Int32
hsize::Int32 #headersize
dsize::Int32 #datasize / (nnoise * T * ncfg)
function CHeader(aux_f::Vector{Float64}, aux_i::Vector{Int32}, theta::Vector{Float64}, sm_par::Vector{Sm})
a = new()
a.k1 = aux_f[1]
a.k2 = aux_f[2]
a.mu1 = aux_f[3]
a.mu2 = aux_f[4]
a.dp1 = aux_f[5]
a.dp2 = aux_f[6]
a.type1 = aux_i[1]
a.type2 = aux_i[2]
a.x0 = aux_i[3]
a.is_real = aux_i[4]
a.theta1 = theta[1:3]
a.theta2 = theta[4:6]
a.q1 = sm_par[1]
a.q2 = sm_par[2]
a.g1 = sm_par[3]
a.g2 = sm_par[4]
a.hsize = 8*12 + 4*8 #without smearing parameters niter, neps
if a.q1.type != 0
a.hsize += 8+4
end
if a.q2.type != 0
a.hsize += 8+4
end
if a.g1.type != 0 && a.g1.type != 3 && a.g1.type != 4
a.hsize += 8+4
end
if a.g2.type != 0 && a.g2.type != 3 && a.g2.type != 4
a.hsize += 8+4
end
a.dsize = 16 - 8* a.is_real
return a
end
end
mutable struct CData
header::CHeader
vcfg::Array{Int32}
re_data::Array{Float64}
im_data::Array{Float64}
id::Int
CData(a, b, c, d, e) = new(a, b, c, d, e)
end
Base.copy(a::CData) = CData(a.header, a.vcfg, a.re_data, a.im_data, a.id)
mutable struct Corr
obs::Vector{uwreal}
mu::Vector{Float64}
gamma::Vector{String}
function Corr(a::Vector{uwreal}, b::CData)
h = getfield(b, Symbol("header"))
mu = [h.mu1, h.mu2]
gamma = [gamma_name[h.type1+1], gamma_name[h.type2+1]]
return new(a, mu, gamma)
end
function Corr(a::Vector{uwreal}, b::Vector{CData})
sym = Symbol.(["mu1", "mu2", "type1", "type2"])
h = getfield.(b, Symbol("header"))
for s in sym
if !all(getfield.(h, s) .== getfield(h[1], s))
println("Corr: Parameter missmatch")
return nothing
end
end
mu = [h[1].mu1, h[1].mu2]
gamma = [gamma_name[h[1].type1+1], gamma_name[h[1].type2+1]]
return new(a, mu, gamma)
end
end
function Base.show(io::IO, a::GHeader)
print(io, "ncorr = ", a.ncorr, "\t")
print(io, "nnoise = ", a.nnoise, "\t")
print(io, "tvals = ", a.tvals, "\t")
print(io, "noisetype = ", noise_name[a.noisetype + 1], "\t")
print(io, "\n")
end
function Base.show(io::IO, a::CHeader)
fnames = fieldnames(CHeader)
for k in fnames
f = getfield(a, k)
if k!=Symbol("type1") && k!=Symbol("type2")
print(io, "$k = $f\t")
else
print(io, "$k = ", gamma_name[f + 1], "\t")
end
end
print(io, "\n")
end
function Base.show(io::IO, a::Sm)
print(io, "\n")
if a.qg == 1
print(io, "type = ", qs_name[a.type+1], "\t")
elseif a.qg == 2
print(io, "type = ", gs_name[a.type+1], "\t")
end
print(io, "niter = ", a.niter, "\t")
print(io, "eps = ", a.eps, "\t")
print(io, "\n")
end
function Base.show(io::IO, a::CData)
print(io, a.header)
end
\ No newline at end of file
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment