deps updated (LsqFit) + fit_routine exported

Manifest.toml

@@ -25,6 +25,18 @@ git-tree-sha1 = "dedbbb2ddb876f899585c4ec4433265e3017215a"
 uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197"
 version = "2.1.0"
 
+[[ArrayInterface]]
+deps = ["LinearAlgebra", "Requires", "SparseArrays"]
+git-tree-sha1 = "bd09109dffaa3926a20178cb8432edd729be0db0"
+uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
+version = "2.13.7"
+
+[[Artifacts]]
+deps = ["Pkg"]
+git-tree-sha1 = "c30985d8821e0cd73870b17b0ed0ce6dc44cb744"
+uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
+version = "1.3.0"
+
 [[BDIO]]
 deps = ["Documenter", "Nettle"]
 git-tree-sha1 = "31aa5298af4936ad33dd39f43ef0c3f7c45fb197"
@@ -37,10 +49,10 @@ version = "0.1.0"
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
 [[Bzip2_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "03a44490020826950c68005cafb336e5ba08b7e8"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "c3598e525718abcc440f69cc6d5f60dda0a1b61e"
 uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
-version = "1.0.6+4"
+version = "1.0.6+5"
 
 [[ColorSchemes]]
 deps = ["ColorTypes", "Colors", "FixedPointNumbers", "Random", "StaticArrays"]
@@ -141,6 +153,12 @@ version = "1.0.1"
 deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
+[[Distributions]]
+deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "StaticArrays", "Statistics", "StatsBase", "StatsFuns"]
+git-tree-sha1 = "501c11d708917ca09ce357bed163dbaf0f30229f"
+uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
+version = "0.23.12"
+
 [[DocStringExtensions]]
 deps = ["LibGit2", "Markdown", "Pkg", "Test"]
 git-tree-sha1 = "50ddf44c53698f5e784bbebb3f4b21c5807401b1"
@@ -166,10 +184,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a"
 version = "0.4.0"
 
 [[FFMPEG_jll]]
-deps = ["Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "LAME_jll", "LibVPX_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "Pkg", "Zlib_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
-git-tree-sha1 = "13a934b9e74a8722bf1786c989de346a9602e695"
+deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "LibVPX_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "Pkg", "Zlib_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
+git-tree-sha1 = "3cc57ad0a213808473eafef4845a74766242e05f"
 uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5"
-version = "4.3.1+2"
+version = "4.3.1+4"
 
 [[FFTW]]
 deps = ["AbstractFFTs", "FFTW_jll", "IntelOpenMP_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Reexport"]
@@ -178,10 +196,10 @@ uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
 version = "1.2.4"
 
 [[FFTW_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "6c975cd606128d45d1df432fb812d6eb10fee00b"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "f10c3009373a2d5c4349b8a2932d8accb892892d"
 uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a"
-version = "3.3.9+5"
+version = "3.3.9+6"
 
 [[FastGaussQuadrature]]
 deps = ["LinearAlgebra", "SpecialFunctions"]
@@ -189,6 +207,18 @@ git-tree-sha1 = "3c73b2165822a0e1c4cc576d925c47d50be55c3d"
 uuid = "442a2c76-b920-505d-bb47-c5924d526838"
 version = "0.4.3"
 
+[[FillArrays]]
+deps = ["LinearAlgebra", "Random", "SparseArrays"]
+git-tree-sha1 = "502b3de6039d5b78c76118423858d981349f3823"
+uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
+version = "0.9.7"
+
+[[FiniteDiff]]
+deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"]
+git-tree-sha1 = "a78ee56e4636c20c2db9ccde8afe57065f6ab387"
+uuid = "6a86dc24-6348-571c-b903-95158fe2bd41"
+version = "2.7.0"
+
 [[FixedPointNumbers]]
 deps = ["Statistics"]
 git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc"
@@ -202,22 +232,22 @@ uuid = "f6369f11-7733-5829-9624-2563aa707210"
 version = "0.10.12"
 
 [[FreeType2_jll]]
-deps = ["Bzip2_jll", "Libdl", "Pkg", "Zlib_jll"]
-git-tree-sha1 = "720eee04e3b496c15e5e2269669c2532fb5005c0"
+deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
+git-tree-sha1 = "cbd58c9deb1d304f5a245a0b7eb841a2560cfec6"
 uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7"
-version = "2.10.1+4"
+version = "2.10.1+5"
 
 [[FriBidi_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "cfc3485a0a968263c789e314fca5d66daf75ed6c"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "0d20aed5b14dd4c9a2453c1b601d08e1149679cc"
 uuid = "559328eb-81f9-559d-9380-de523a88c83c"
-version = "1.0.5+5"
+version = "1.0.5+6"
 
 [[GMP_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "4dd9301d3a027c05ec403e756ee7a60e3c367e5d"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "15abc5f976569a1c9d651aff02f7222ef305eb2a"
 uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d"
-version = "6.1.2+5"
+version = "6.1.2+6"
 
 [[GR]]
 deps = ["Base64", "DelimitedFiles", "HTTP", "JSON", "LinearAlgebra", "Printf", "Random", "Serialization", "Sockets", "Test", "UUIDs"]
@@ -269,6 +299,11 @@ git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
 uuid = "82899510-4779-5014-852e-03e436cf321d"
 version = "1.0.0"
 
+[[JLLWrappers]]
+git-tree-sha1 = "c70593677bbf2c3ccab4f7500d0f4dacfff7b75c"
+uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
+version = "1.1.3"
+
 [[JSON]]
 deps = ["Dates", "Mmap", "Parsers", "Unicode"]
 git-tree-sha1 = "81690084b6198a2e1da36fcfda16eeca9f9f24e4"
@@ -276,10 +311,10 @@ uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
 version = "0.21.1"
 
 [[LAME_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "a7999edc634307964d5651265ebf7c2e14b4ef91"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "df381151e871f41ee86cee4f5f6fd598b8a68826"
 uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d"
-version = "3.100.0+2"
+version = "3.100.0+3"
 
 [[LaTeXStrings]]
 git-tree-sha1 = "c7aebfecb1a60d59c0fe023a68ec947a208b1e6b"
@@ -291,10 +326,10 @@ deps = ["Printf"]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 
 [[LibVPX_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "e02378f5707d0f94af22b99e4aba798e20368f6e"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "85fcc80c3052be96619affa2fe2e6d2da3908e11"
 uuid = "dd192d2f-8180-539f-9fb4-cc70b1dcf69a"
-version = "1.9.0+0"
+version = "1.9.0+1"
 
 [[Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
@@ -306,6 +341,12 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 [[Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
+[[LsqFit]]
+deps = ["Distributions", "ForwardDiff", "LinearAlgebra", "NLSolversBase", "OptimBase", "Random", "StatsBase"]
+git-tree-sha1 = "b32b5549461fcb93bce223e264d4a7ef0c9923fd"
+uuid = "2fda8390-95c7-5789-9bda-21331edee243"
+version = "0.11.0"
+
 [[MKL_jll]]
 deps = ["IntelOpenMP_jll", "Libdl", "Pkg"]
 git-tree-sha1 = "eb540ede3aabb8284cb482aa41d00d6ca850b1f8"
@@ -348,6 +389,12 @@ version = "0.4.4"
 [[Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 
+[[NLSolversBase]]
+deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
+git-tree-sha1 = "39d6bc45e99c96e6995cbddac02877f9b61a1dd1"
+uuid = "d41bc354-129a-5804-8e4c-c37616107c6c"
+version = "7.7.1"
+
 [[NaNMath]]
 git-tree-sha1 = "c84c576296d0e2fbb3fc134d3e09086b3ea617cd"
 uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
@@ -366,34 +413,46 @@ uuid = "4c82536e-c426-54e4-b420-14f461c4ed8b"
 version = "3.4.1+1"
 
 [[Ogg_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "4c3275cda1ba99d1244d0b82a9d0ca871c3cf66b"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "a42c0f138b9ebe8b58eba2271c5053773bde52d0"
 uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051"
-version = "1.3.4+1"
+version = "1.3.4+2"
 
 [[OpenSSL_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "997359379418d233767f926ea0c43f0e731735c0"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "71bbbc616a1d710879f5a1021bcba65ffba6ce58"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "1.1.1+5"
+version = "1.1.1+6"
 
 [[OpenSpecFun_jll]]
-deps = ["CompilerSupportLibraries_jll", "Libdl", "Pkg"]
-git-tree-sha1 = "d51c416559217d974a1113522d5919235ae67a87"
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "9db77584158d0ab52307f8c04f8e7c08ca76b5b3"
 uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
-version = "0.5.3+3"
+version = "0.5.3+4"
+
+[[OptimBase]]
+deps = ["NLSolversBase", "Printf", "Reexport"]
+git-tree-sha1 = "4c26a757fbb5b1893b7df19a44e21762d8f8e470"
+uuid = "87e2bd06-a317-5318-96d9-3ecbac512eee"
+version = "2.0.1"
 
 [[Opus_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "cc90a125aa70dbb069adbda2b913b02cf2c5f6fe"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "f9d57f4126c39565e05a2b0264df99f497fc6f37"
 uuid = "91d4177d-7536-5919-b921-800302f37372"
-version = "1.3.1+2"
+version = "1.3.1+3"
 
 [[OrderedCollections]]
 git-tree-sha1 = "16c08bf5dba06609fe45e30860092d6fa41fde7b"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
 version = "1.3.1"
 
+[[PDMats]]
+deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"]
+git-tree-sha1 = "95a4038d1011dfdbde7cecd2ad0ac411e53ab1bc"
+uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
+version = "0.10.1"
+
 [[PGFPlotsX]]
 deps = ["ArgCheck", "DataStructures", "Dates", "DefaultApplication", "DocStringExtensions", "MacroTools", "Parameters", "Requires", "Tables"]
 git-tree-sha1 = "1adde3d07cce96b6a3bb88572612db4bd9d6153b"
@@ -487,6 +546,18 @@ git-tree-sha1 = "2fc2e1ab606a5dca7bbad9036a694553c3a57926"
 uuid = "ae029012-a4dd-5104-9daa-d747884805df"
 version = "1.0.3"
 
+[[Rmath]]
+deps = ["Random", "Rmath_jll"]
+git-tree-sha1 = "86c5647b565873641538d8f812c04e4c9dbeb370"
+uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
+version = "0.6.1"
+
+[[Rmath_jll]]
+deps = ["Libdl", "Pkg"]
+git-tree-sha1 = "d76185aa1f421306dec73c057aa384bad74188f0"
+uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
+version = "0.2.2+1"
+
 [[Roots]]
 deps = ["Printf"]
 git-tree-sha1 = "1211c7c1928c1ed29cdcef65979b7a791e3b9fbe"
@@ -544,12 +615,22 @@ git-tree-sha1 = "d72a47c47c522e283db774fc8c459dd5ed773710"
 uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 version = "0.33.1"
 
+[[StatsFuns]]
+deps = ["Rmath", "SpecialFunctions"]
+git-tree-sha1 = "04a5a8e6ab87966b43f247920eab053fd5fdc925"
+uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
+version = "0.9.5"
+
 [[StructArrays]]
 deps = ["Adapt", "DataAPI", "Tables"]
 git-tree-sha1 = "8099ed9fb90b6e754d6ba8c6ed8670f010eadca0"
 uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
 version = "0.4.4"
 
+[[SuiteSparse]]
+deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
+uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
+
 [[TableTraits]]
 deps = ["IteratorInterfaceExtensions"]
 git-tree-sha1 = "b1ad568ba658d8cbb3b892ed5380a6f3e781a81e"
@@ -590,37 +671,37 @@ uuid = "81def892-9a0e-5fdd-b105-ffc91e053289"
 version = "1.2.0"
 
 [[Zlib_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "fdd89e5ab270ea0f2a0174bd9093e557d06d4bfa"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "320228915c8debb12cb434c59057290f0834dbf6"
 uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
-version = "1.2.11+16"
+version = "1.2.11+18"
 
 [[libass_jll]]
-deps = ["Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "Libdl", "Pkg", "Zlib_jll"]
-git-tree-sha1 = "f02d0db58888592e98c5f4953cef620ce9274eee"
+deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
+git-tree-sha1 = "acc685bcf777b2202a904cdcb49ad34c2fa1880c"
 uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0"
-version = "0.14.0+3"
+version = "0.14.0+4"
 
 [[libfdk_aac_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "e17b4513993b4413d31cffd1b36a63625ebbc3d3"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "7a5780a0d9c6864184b3a2eeeb833a0c871f00ab"
 uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
-version = "0.1.6+3"
+version = "0.1.6+4"
 
 [[libvorbis_jll]]
-deps = ["Libdl", "Ogg_jll", "Pkg"]
-git-tree-sha1 = "8014e1c1033009edcfe820ec25877a9f1862ba4c"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
+git-tree-sha1 = "fa14ac25af7a4b8a7f61b287a124df7aab601bcd"
 uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
-version = "1.3.6+5"
+version = "1.3.6+6"
 
 [[x264_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "e496625b900df1b02ab0e02fad316b77446616ef"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "d713c1ce4deac133e3334ee12f4adff07f81778f"
 uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
-version = "2020.7.14+1"
+version = "2020.7.14+2"
 
 [[x265_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "ac7d44fa1639a780d0ae79ca1a5a7f4181131825"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "487da2f8f2f0c8ee0e83f39d13037d6bbf0a45ab"
 uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"
-version = "3.0.0+2"
+version = "3.0.0+3"

Project.toml

@@ -8,5 +8,6 @@ ADerrors = "5e92007d-7bf1-471c-8ceb-4591b8b567a9"
 BDIO = "375f315e-f2c4-11e9-2ef9-134f02f79e27"
 LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+LsqFit = "2fda8390-95c7-5789-9bda-21331edee243"
 PyPlot = "d330b81b-6aea-500a-939a-2ce795aea3ee"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"

src/juobs.jl

 module juobs
-using ADerrors, PyPlot, Statistics, LaTeXStrings, LinearAlgebra
+using ADerrors, PyPlot, Statistics, LaTeXStrings, LinearAlgebra, LsqFit
 
 include("juobs_types.jl")
 include("juobs_linalg.jl")
@@ -9,7 +9,7 @@ include("juobs_obs.jl")
 
 export read_mesons, read_ms1
 export get_matrix, uwgevp_tot, energies
-export corr_obs, plat_av, lin_fit, x_lin_fit, y_lin_fit
+export corr_obs, plat_av, lin_fit, x_lin_fit, y_lin_fit, fit_routine
 export meff, dec_const_pcvc 
 
 end # module